• A. Ortiz-Velez, J. Sukumaran, ST Kelley,  AutoPhy: Automated phylogenetic identification of novel protein subfamilies, PLOS ONE (2023) **Accepted** 
• L Sisk-Hackworth, Adrian Ortiz-Velez*, M Reed, ST Kelley. Compositional Data Analysis of Periodontal Disease Microbial Communities, Frontiers in Microbiology (2021) 
• E Hillman, E Frazier, EK Shank, Adrian Ortiz-Velez*, J Englaender, KV Solomon. Anaerobic Fungal Mevalonate Pathway Genomic Biases Lead to Heterologous Toxicity Underpredicted by Codon Adaptation Indices. Microorganisms (2021)
• C Hooker, E Hillman, J Overton, Adrian Ortiz-Velez*, ...., KV Solomon. Hydrolysis of untreated lignocellulosic feedstock is independent of S-lignin composition in newly classified anaerobic fungal isolate, Piromyces sp. UH3-1, Biotechnology for Biofuels (2018)